MA3-028

antibody from Invitrogen Antibodies

Targeting: HSPA1A HSP70-1, HSPA1

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Antibody Data
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References [137]
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Immunocytochemistry [7]
Immunohistochemistry [1]
Other assay [41]

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Product number: MA3-028 - Provider product page
Provider: Invitrogen Antibodies
Product name: mtHSP70 Monoclonal Antibody (JG1)
Antibody type: Monoclonal
Antigen: Synthetic peptide
Description: MA3-028 detects mitochondrial heat shock protein 70 kDa (mtHSP70) from human, non-human primate, canine and mouse tissues.
Antibody clone number: JG1
Concentration: 1.07 mg/mL

HSPA1A protein structure - MA3-028 shown in red.

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Experimental details: Immunofluorescent analysis of Heat Shock Protein 70 using anti-Heat Shock Protein 70 monoclonal antibody (Product # MA3-028) shows staining in A549 Cells.

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Experimental details: Immunofluorescent analysis of Heat Shock Protein 70 using anti-Heat Shock Protein 70 monoclonal antibody (Product # MA3-028) shows staining in HMVEC Cells.

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Experimental details: Immunofluorescent analysis of Heat Shock Protein 70 using anti-Heat Shock Protein 70 monoclonal antibody (Product # MA3-028) shows staining in NS-1 Cells.

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Experimental details: Immunofluorescent analysis of Heat Shock Protein 70 using anti-Heat Shock Protein 70 monoclonal antibody (Product # MA3-028) shows staining in p19 Cells.

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Experimental details: Immunolocalization of mtHSP70 in human fibroblasts using Product # MA3-028.

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Experimental details: Immunolocalization of mtHSP70 in human fibroblasts using Product # MA3-028.

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Experimental details: Immunofluorescent analysis of Heat Shock Protein 70 (Hsp70, green) in HeLa cells. Formalin fixed cells were permeabilized with 0.1% Triton X-100 in TBS for 10 minutes at room temperature and blocked with 1% Blocker BSA (Product # 37525) for 15 minutes at room temperature. Cells were probed with (left panel) or without (right panel) a Hsp70 monoclonal antibody (Product # MA3-028), at a dilution of 1:50 for at least 1 hour at room temperature, washed with PBS, and incubated with DyLight 488 goat-anti-mouse IgG secondary antibody (Product # 35502) at a dilution of 1:400 for 30 minutes at room temperature. F-Actin (red) was stained with Dylight 554 phalloidin (Product # 21834), and nuclei (blue) were stained with Hoechst 33342 dye (Product # 62249). Images were taken on a Thermo Scientific ArrayScan or ToxInsight at 20X magnification.

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Experimental details: Figure 1 Combined proteomic and phosphoproteomic analysis of isolated adhesion complexes. ( a ) Schematic workflow for the isolation and proteomic/phosphoproteomic analysis of adhesion complexes. Cells were allowed to spread on FN or, as a control, Tf and complexes were isolated by a combination of crosslinking, cell lysis and a high-pressure wash to remove cell bodies. Collected complexes were analysed using either a proteomic or phosphoproteomic workflow, after which the FN-specific proteins and phosphoproteins were identified by performing a subtractive comparison with controls. ( b ) Immunoblot analysis of complexes isolated from cells spread on FN and Tf, as well as the WCLs of cells spread on FN. M, MW markers (kDa; values displayed to the left of each blot). Dashed lines indicate where images have been cropped for display purposes. ( c ) A Venn diagram showing the overlap between the FN-specific proteins (left circle) and phosphoproteins (right circle) identified by proteomic and phosphoproteomic analyses of isolated complexes, respectively. In addition to the total number of proteins (black text), the number of adhesome proteins identified in each data set is also displayed (red text). To the right of the panel, all 19 adhesome components identified exclusively by the phosphoproteomic analysis are displayed. Proteins in bold text were not identified by any other proteomic analyses of isolated FN-induced adhesion complexes.

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Experimental details: Fig. 9 EtOH sensitizes HepG2 via increased Bak oligomerization but fails to sensitize VL-17A cells to tBid-induced OMMP. a , b Representative time-course recording of DeltaPsi m in permeabilized VI-7 a and VL-17A b cell suspension. Arrows show the addition of zero or 8.3 nM tBid. c Bar charts show the average of the time to reach to 15% of the depolarization upon treating the VI-7 and VL-17A cells with 8.3 nM tBid as described in Fig. 8a, b . (*: p < 0.05, n = 4). d Western blot using anti-cyto c antibody for the cytosolic fraction of the EtOH-exposed or non-exposed VI-7 and VL-17A cells. Permeabilized cells were treated with tBid for 150 s (left panel) or 450 s (right panel) and as described in Fig. 6e . TCs are the samples that were not treated with tBid. e Western blot using anti-Bid in the membrane fraction of EtOH-exposed and non-exposed VI-7 and VL-17A cells that were treated with 8.3 nM tBid. Hsp70 was used as loading control. f Western blot using anti-Bak (upper panels) and anti-Bax (lower panels) in the membrane fraction lysates of ethanol exposed and non-exposed VI-7 and VL-17A cells, which were treated with either zero (left panels) or 8.3 nM tBid (right panel). Membrane fractions were separated from cytosol and were treated with BMH (poly-linker) as described in Materials and methods. (O: oligomeric, ns: non-specific band, m: monomeric band) g Western blot of whole cell and membrane fraction lysates or cytosol fraction of the ethanol exposed

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Experimental details: Fig. 1 Localization of ErbB2 in mitochondria. (A) Cytosolic, nuclear, mitochondrial, and plasma membrane proteins were isolated and subjected to SDS-PAGE followed by probing with indicated antibodies. Two exogenous ErbB2 overexpressing breast cancer cell lines MCF7/ErbB2 and MDA-MB-231 (left), and two natural ErbB2-positive breast cancer cell lines SKBR3 and BT474 (right) were used for Western Blotting. VDAC1 and prohibitin were mitochondrial markers; Integrin beta1 and IGF1Ralpha were plasma membrane markers; alpha-Tubulin and ERK were cytoplasmic markers; KDEL was an ER marker; EEA1 was an early endosomes marker; Golgi complex was a marker for the detection of Golgi; LAMP2 was an lysosome marker and Lamin B1 was a nucleus marker. (B) MCF7 cells, mouse heart and liver tissues, and ErbB2 positive and negative breast cancer patient samples were analyzed by Western blotting. (C) Co-localization of ErbB2 and mitochondria. Mitochondria were stained with Mitotracker-Green in ErbB2 transfected MCF7 cells. The cells were fixed and incubated with antibodies against ErbB2 (mouse), followed by incubation of monoclonal mouse Anti-Cy3 antibody (red). Images were analyzed with Nikon NIS-Elements AR software. Green: mitochondria; Red: ErbB2; Yellow: Co-localization of ErbB2 and mitochondria. The lower panel contains images with a higher magnification. Scale bars: 20 mum. (D) Localization of ErbB2 inside mitochondria. Intact mitochondria of SKBR3 cells were isolated and treated with Proteas

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Experimental details: Fig. 3 MtErbB2 reprograms cellular metabolism from oxidative phosphorylation toward glycolysis. (A) Mitochondrial and whole cell lysate of 231V, 231ErbB2WT, 231ErbB2Mito, and 231ErbB2DeltaMTS cells were isolated and analyzed by Western blotting. Protein amounts of each fraction loaded: mitochondria: 10 ug; whole cell lysate: 30 ug. Integrin beta1 was used as plasma membrane maker and loading control; mtHSP70 was a mitochondrial maker and loading control; alpha-Tubulin was a cytoplasm maker; KDEL was an ER marker; EEA1 was an early endosomes marker; Golgi Complex was a marker for the detection of Golgi; LAMP2 was an lysosome marker and Lamin B1 was a nucleus marker. (B) Oxygen consumption rates. Oxygen consumption rates of 231V, 231ErbB2WT, 231ErbB2Mito, 231ErbB2DeltaMTS and 231ErbB2MitoKM cells were measured. The oxygen consumption rate was calculated on the basis of the maximal rate of change in relative fluorescence units (DFU/second). (C) Activities of the mitochondrial electron transport chain complexes in 231V, 231ErbB2WT, 231ErbB2Mito, 231ErbB2DeltaMTS and 231ErbB2MitoKM cells. Activities are presented as milliunits of O.D. value per min and were normalized by the amounts of the mitochondrial proteins. (D) Mitochondrial membrane potential (DeltaPsim) of 231V, 231ErbB2WT, 231ErbB2Mito, 231ErbB2DeltaMTS and 231ErbB2MitoKM cells was detected using JC-1 staining. The aggregate form of JC-1 staining represents healthy mitochondria. (E) The cellular ATP/ADP ratio of 231V, 231

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Experimental details: Fig. 2 (A) Western blot experiments demonstrating the effects of acute immobilization chronic isolation and combined stress on the level of total glucocorticoid receptor (tGR) and its phosphoisoforms in mitochondria of hippocampus and prefrontal cortex. Mitochondrial lysates were resolved by SDS-PAGE and probed with antibodies against tGR, pGR171, pGR232, pGR246 or mHsp70 as a loading control. (B) Immunoreactivities of mitochondrial tGR, pGR171, pGR232, pGR246 (normalized to mHsp70) in hippocampus and prefrontal cortex. The ratios of pGR232/171 and pGR232/246 (normalized to GR and mHsp70) are expressed as mean +- SEM and presented as a percent of control (as described under Section 2 ). Asterisk indicates significant differences between treated groups: acute (A), chronic (C) and combined (CA) obtained from one-way ANOVA followed by Tukey post hoc test (* p < 0.05, stress vs. control; % p < 0.05, acute vs. combined; $ p < 0.05 chronic vs. combined). (C) The purity of subcellular fractions was assayed using specific antibodies against alpha-tubulin for cytoplasmic, NBS1 for nuclear, and mHsp70 for mitochondrial fraction. (D) Western blot of GR probed with antibody specific for its phosphorylated T171 isoform in the absence (lane 1) or presence (lane 4, PEP) of specific peptide used as antigen for this antibody. Membrane strips were also incubated with preimmune serum (lane 2, PI) or with non-specific IgG (lane 3, NS) (top panel). Blot was stripped of primary antibodies and prob

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Experimental details: Figure 4 Translocation of Bid to mitochondria during staurosporine-induced apoptosis of HeLa cells. (A) Mitochondria from HeLa cells before and after treatment with 1 muM staurosporine for 5 and 12 h were isolated on a sucrose gradient and analyzed for the presence of Bid and Bax by Western blotting. pAbs against full-length recombinant Bid (top) and to amino acids 1-21 of human Bax (middle) were used. Level of mt-hsp-70 (bottom) was used as a gel loading control. (B) Mitochondria from control HeLa cells (black curve) and HeLa cells treated with 1 muM staurosporine for 9 h (red curve) were isolated on a sucrose gradient, fixed, immunostained for Bid, and analyzed by flow cytometry.

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Experimental details: Figure 8 Bid-induced cytochrome c release from mitochondria. (A) Mitochondria from HeLa cells were isolated on a sucrose gradient, incubated for 15 min at 30degC with increasing concentrations of recombinant Bid as indicated. The incubation mix was centrifuged and the supernatants and pellets were analyzed for cytochrome c content by Western blot. mt-hsp-70 was used as a gel loading control. (B) Mitochondria from HeLa cells isolated on a sucrose gradient were incubated for 15 min at 30degC with 100 nM of wild-type Bid in the presence or absence of 1 muM of Bcl-2, Bcl-x L , or a mutant of Bcl-x L in which Gly 138 was replaced by an alanine (Bcl-x L m). Mitochondria were then centrifuged and the cytochrome c content of both the pellet and the supernatant of each sample was estimated by Western blotting. Equal loading of the mitochondrial pellet was confirmed with the antibody to mt-hsp-70.

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Experimental details: Figure 9 Involvement of Bax and Bcl-2 in the Bid-induced release of cytochrome c from mitochondria. (A) Mitochondria were isolated on a sucrose gradient from HeLa cells, Bcl-2-overexpressing HeLa cells, and from the Bax-deficient colon tumor cells LS180. They were incubated for 15 min at 30degC in the presence of increasing concentrations of recombinant Bid and the contents of cytochrome c of both the mitochondrial pellets and the supernatants were estimated by Western blot. Equal loading of the mitochondrial pellet was confirmed with the monoclonal anti-COX-IV antibody. (B) Mitochondria from LS180 cells were incubated for 15 min at 30degC with 5 muM recombinant Bax lacking 20 amino acids at the COOH terminus in the presence or absence of 50 nM recombinant Bid. Cytochrome c was detected by Western blot in the mitochondrial pellets and the supernatants. Equal loading of the mitochondrial pellet was confirmed with the antibody against mt-hsp-70. (C) Flow cytometric analysis of Bak immunostaining of mitochondria isolated from HeLa and LS180 cells. Mitochondria from both cell types were isolated on a sucrose gradient and incubated with 1 muM recombinant Bid for 15 min at 30degC before fixation, immunostaining with an antibody raised against NH 2 -terminal domain of Bak (amino acids 1-52; Calbiochem ), and FACS (r) analysis. Black curve: control. Red curve: 1 muM Bid.

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Experimental details: FIGURE 4. DSP18 is associated with the inner mitochondrial membrane facing the intermembrane space. A , diagram of mitochondrial subfractionation as described under ""Experimental Procedures."" B , 20 mug of each submitochondrial fraction (Fig. 4 A ) were separated by SDS-PAGE and immunoblotted with markers for OM (anti-VDAC), IMS (anti-SMAC), IM (anti-PTPMT1), and soluble matrix ( SM ; anti-Hsp70 - heat shock protein 70). C , 200 mug of MP and SMP were treated with 2.5 mug of trypsin in 100 mul of buffer for the indicated amounts of time. Samples were pelleted, washed, separated by SDS-PAGE, and immunoblotted with anti-DSP18 and anti-PTPMT1. The Complex 1 subunit NDUFB6 was not susceptible to trypsin digestion and was used as a loading control. D , 100 mug of osmotically swollen whole mitochondria and MP were washed with either control buffer, high salt (200 m m KCl, 2 m m HEPES, pH 7.2), or high pH (0.1 m Na 2 CO 3 , pH 11.5) buffer, repelleted, washed, and separated out by SDS-PAGE. Immunoblots were probed with antibodies against DSP18, cyt c, and PTPMT1.

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Experimental details: FIGURE 7. Endogenous SAPK/JNK is not localized to mitochondria. A , rat kidneys were isolated and homogenized ( HOM ), nuclei and unbroken cells were removed (post-nuclear supernatant (PNS)), Mito were removed, and the post-mitochondrial supernatant ( PMS ) was collected. Fractions were separated out by SDS-PAGE and immunoblotted with antibodies against both the p54 and p46 SAPK/JNK isoforms, mitochondrial marker protein Hsp70, and DSP18. B , fractions collected from testis tissue were separated out by SDS-PAGE and immunoblotted with antibodies against SAPK/JNK, Hsp70, and DSP21. C , fractions collected from rat liver tissue were separated out by SDS-PAGE and immunoblotted with antibodies against SAPK/JNK and Hsp70. D , HEK-293A cells were homogenized ( Hom ), and Mito were isolated by differential centrifugation after treatment with 40 mJ/cm 2 of UV radiation and compared with untreated controls. Fractions were separated out and immunoblotted with antibodies against phospho ( p )-SAPK/JNK (active), SAPK/JNK, and NDUFB6. E , HEK-293A cells transfected with DSP18-EGFP or a catalytic inactive mutant DSP18(C/S)-EGFP. After 24 h cells were treated with 40 mJ/cm 2 of UV radiation, and equal amounts of whole cell lysate were separated out by SDS-PAGE and analyzed for changes in SAPK/JNK phosphorylation.

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Experimental details: Fig. 4 (A) Western blot experiment demonstrating the effect of stress on mitochondrial and cytoplasmic Bcl2 and Bax levels in rat hippocampus and prefrontal cortex. (B) Immunorectivities of Bcl2 and Bax (normalized to mHsp70) in mitochondrial extracts and cytoplasm (normalized to beta-actin) of hippocampus or prefrontal cortex under acute (A), chronic (C) and combined (CA) stress and the ratio of mitochondrial to cytoplasmic Bcl2 and Bax are given as mean +- SEM, as a percent of control (as described under Section 2 ). Asterisk indicates significant differences obtained from one-way ANOVA followed by Tukey post hoc test (* p < 0.05, stress vs. control; % p < 0.05, acute vs. combined; $ p < 0.05 chronic vs. combined).

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Experimental details: FIGURE 1. XIAP forms high molecular weight membrane-associated complexes in response to ECM withdrawal. A , primary mammary epithelial cells or FSK7 MECs were either left adherent or detached and plated onto poly(2-hydroxyethyl methacrylate)-coated dishes for 4 h ( D4hr ) or 8 h ( D8hr ). Cells were stained with DAPI, and apoptosis was scored by counting the percentage of nuclei with apoptotic morphology. Data represent the average of three independent experiments +- S.E. B , MECs were either left adherent ( Adh ) or detached for 15 min ( D15 ), 60 min ( D60 ), or 4 h ( D4hr ). Cells were then fractionated into cytosolic, membrane, and nuclear fractions and immunoblotted ( I.B. ) with the antibodies shown. Apaf-I, mtHSP70, and histone H3 were used as loading controls for each fraction, respectively. C , MECs were either left adherent ( Adh ) or detached for 60 min ( D60 ). Cytosolic or membrane fractions were separated by BN-PAGE (first dimension), then SDS-PAGE (second dimension), and immunoblotted with the antibodies shown. Keyhole limpet hemocyanin ( KLH ), beta-amylase, and bovine serum albumin ( BSA ) protein standards were used to calibrate the BN-PAGE. Membrane fractions were reprobed with anti-Bax and anti-mtHSP70.

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Experimental details: FIGURE 4. Membrane association of XIAP corresponds with ability to induce MOMP. A , MECs transiently expressing RFP-XIAP were stained with mitochondrial HSP70 ( green ). Note close association of RFP-XIAP with mtHSP70 ( arrows and enlarged view on right ). B , to confirm mitochondrial association of RFP-XIAP, cells were co-transfected with RFP-XIAP and a V5-epitope tagged form of Bid that constitutively localizes to mitochondria ( p11BidV5 ). C and D , MEF cells transiently expressing Myc-XIAP were either left adherent ( Adh ) or detached for 60 min ( D60 ) prior to fractionation. Samples were separated by SDS-PAGE only ( C ) or by BN-PAGE followed by SDS-PAGE ( D ) and immunoblotted for XIAP. Arrow and arrowhead indicate Myc-XIAP and endogenous XIAP, respectively. Note that the cytosolic Myc-XIAP was in a complex of the same size as the endogenous protein (compare lanes 6-12 D , upper panel , and Fig. 1 C , top panel ). E and F , MECs transiently expressing RFP, RFP-XIAP ( XIAP ), RFP-BIR3-RING, or RFP-BIR3 were scored for cytochrome c release. G , cytosolic and membrane fractions of MEF cells, untransfected or transiently expressing Myc-XIAP, Myc-BIR3-RING, or Myc-BIR3 were analyzed by immunoblotting for Myc and reprobing for XIAP. Arrowhead indicates endogenous XIAP. Arrows indicate transfected, membrane-localized XIAP fragments. Note that BIR3 is only present in the cytosolic fraction and that Myc-BIR3 is only detected by the Myc antibody because it does not contain the e

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Experimental details: Figure 1 Cellular localization of Tid1 full length and its deletion mutants MCF-7 cells were transfected with Tid1 constructs to overexpress Tid1 full length or its domain deletion mutants (A) Schematic diagram of Tid1-EGFP full length or the domain deletion mutants (B) Immunoblotting analysis for Tid1 and its mutants. (C) Tid1-EGFP transfected cells labeled with anti-mtHsp70 were visualized by confocal microscope. (D) Mander's Overlap Co-efficient between the various Tid1 constructs and mtHsp70 as determined by Image J Intensity Correlation Analysis Software, with 1 being a high colocalization and 0 being low (n=4). Results are representative of a minimum of two independent experiments. (E) Cells were subjected to biochemical fractionation (W = whole cell extracts; C = cytosolic fraction; and M = mitochondrial fraction) followed by immunoblotting. Purity of the fractions was determined by immunoblotting with anti-mtHsp70 (mitochondrial) and anti-beta-tubulin (cytosolic) antibodies.

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Experimental details: Figure 2 Cellular localization of p53 full length and its deletion mutants MCF-7 cells were transfected with p53 constructs to overexpress p53 full length or its domain deletion mutants (A) Schematic diagram of p53-DsRed2 full length or domain deletion mutants (B) Immunoblotting analysis for p53 and its mutants. (C) p53-DsRed2 transfected cells labeled with anti-mtHsp70 were visualized by confocal microscope. (D) Mander's Overlap Co-efficient between the various p53 constructs and mtHsp70 as determined as described in Fig. 1 D . (E) Cellular fraction were obtained as described in Fig. 1 E .

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Experimental details: Figure 5 Suppression of Tid1 leads to loss of p53 at mitochondria and resistance to apoptosis following cellular stresses. MCF-7 cells stably expressing non-silencing shRNA (shScram) or shRNA directed against Tid1 (shTid1) were incubated in the presence or absence of 250 muM DFX or 100 muM for ETO 6 hr. (A) Tid1 expression in MCF-7 cells stably expressing shScram or shTid1. (B) Cells labeled with anti-p53 antibodies (green) and anti-mtHsp70 antibodies (red) were visualized by confocal microscopy. (C) Apoptotic cells were detected by in situ TUNEL assay.

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Experimental details: FIGURE 3. beta1-Integrin- MECs contain functional adhesomes and show collective two-dimensional cell migration. a , beta1 fx/fx ;CreER TM MECs treated with 4OHT or untreated controls ( C ) were cultured on collagen-I coated coverslips, fixed 3 days after isolation, and stained for beta1-integrin ( red ) and talin, vinculin, or Fak ( green ). Bar : 20 mum. b , immunoblotting of lysates from untreated and beta1-integrin-deleted (4OHT) MECs cultured for 3 days and probed for the indicated antigens. Mitochondrial Hsp70 ( mtHsp70 ) was used a loading control. The intensity of the bands was quantified using the Odyssey system, and the level of signal in the 4OHT-treated samples is plotted relative to untreated. Error bars = S.E. c , immunoblotting of lysates from CreER TM -only MECs replated onto collagen I. d , immunofluorescence staining of paxillin-Tyr(P)-31 ( p-pax ) in control and 4OHT-treated MECs. Bar : 20 mum. e , beta1- MECs stained with beta1- and beta3-integrin antibodies. Bar : 20 mum. f , control ( C ) and beta1- (4OHT) acini were plated onto two-dimensional collagen I-coated plates. The acini were allowed to attach, and the cells migrated onto the culture surface. At the end of the experiment, the cells were stained for EdU and beta1-integrin. Note the absence of EdU incorporation in the beta1- cells. Asterisks indicate location of acini from which the cells emigrated. White dotted line indicates migration front. Bar : 40 mum. g , acini were treated wi

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Experimental details: Fig. 2 Analysis of the mechanisms of mtErbB2 mitochondrial localization. (A) MCF7 breast cancer cells were transfected with plasmids encoding either GFP alone, or GFP fused ErbB2 fragments GFP-646-689, GFP-623-645 or GFP-623-689. Cells were cultured and the florescent imaging was done as described under the ""Methods."" Scale bars: 20 mum. (B) MDA-MB-231 cells were transfected with wild-type ErbB2 and ErbB2DeltaMTS vectors and mitochondrial proteins were extracted. ErbB2 expression was measured by Western blotting analysis; alpha-Tubulin and mtHSP70 were loading controls. (C) Mitochondrial proteins were isolated from MDA-MB-231ErbB2 cells and immunoprecipitated with ErbB2 antibody. The immunoprecipitates were probed with anti-mtHSP70 and anti-ErbB2 (top left). Mitochondrial proteins from the same cells were precipitated with mtHSP70 antibody and the immunoprecipitates were probed with anti-mtHSP70 and anti-ErbB2 (top right). IgG was used as a negative control. Isolated mitochondrial proteins (input) were loaded as a positive control. Similar results were obtained using another breast cancer cell line, SKBR3 (bottom). (D) siRNA specific to mtHSP70 was transfected into MDA-MB-231ErbB2 cells. The cytoplasmic fraction (Cyto), mitochondrial fraction (Mito) and whole cell lysate (WCL) were separated for western blotting analysis (left). Cytochrome c oxidase subunit II and alpha-Tubulin were makers and loading controls for the mitochondrial fraction and the cytoplasmic fraction, res

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Experimental details: Fig. 5 Translocation of ErbB2 into mitochondria contributes to trastuzumab resistance. (A) mtErbB2 is elevated in trastuzumab-resistant cancer cells. Mitochondrial proteins and whole cell lysates of BT474 and BT474 trastuzumab-resistant cells (BT474 HCP R) were isolated and analyzed by Western blotting. ATP Synthase and alpha-Tubulin were used as loading controls. (B) BT474 cells were treated with trastuzumab (HCP) at 10 ug/ml for 24 h and 48 h followed by the separation of cytosolic and mitochondrial fractions. Proteins from the cytoplasm, mitochondria and whole cell lysates were loaded onto gels and analyzed by Western blotting. mtHSP70 and alpha-Tubulin were used as loading controls (left). The relative protein amount of ErbB2 in the cellular fractions was calculated by detecting the intensity of the protein bands followed by normalization with loading controls (right). The experiments were repeated for three times. (C) mtErbB2-overexpressing cells are more resistant to trastuzumab. 231ErbB2WT, 231ErbB2Mito, 231ErbB2DeltaMTS, 231ErbB2MitoKM and 231ErbB2WT cells transfected by siRNA to mtHSP70 were treated with trastuzumab at 100 ug/ml for 48 h and 72 h. The cell growth inhibition ratios were detected by a CellTiter 96 Aqueous One Solution Cell Proliferation Assay Kit. Columns, mean of three independent experiments; bars, SE. *, P

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Experimental details: Fig. 6 Translocation of ErbB2 into mitochondria is kinase dependent. (A) The mitochondrial fractions and whole cell lysates were isolated and Western blotting was performed on MDA-MB-435ErbB2 (435eb), MDA-MB-435ErbB2V695E (435VE) and MDA-MB-435ErbB2K753M (435KM) cells. MtHSP70 and alpha-Tubulin were loading controls. (B) Mitochondrial fractions and whole cell lysates were isolated and Western Blotting was performed to detect mtErbB2 in mitochondria following the treatment of MCF7ErbB2 cells with ErbB2 inhibitor AG825 at 10 uM or control (DMSO) for 24 h; and with Heregulin beta1 (HRG) at 10 ng/ml or control (PBS) for 24 h (upper). Whole cell lysates were subjected to Western Blotting to examine the phosphorylation status of ErbB2 and the total ErbB2. alpha-Tubulin was loading control (lower). (C) MCF7 cells were treated with and without HRG at 10 ng/ml for 24 h. The mitochondrial fraction and the whole cell lysate were isolated for Western blotting. Prohibitin and alpha-Tubulin were loading controls. (D) Left, mitochondrial proteins were isolated from SKBR3 cells and immunoprecipitated with anti-ErbB2 or anti-Cox II antibodies. The immunoprecipitates were analyzed by Western blotting with anti-ErbB2 and anti-Cox II antibodies. IgG was negative control. Right, mitochondrial proteins were isolated from 231V, 231ErbB2WT, 231ErbB2Mito and 231ErbB2MitoKM cells and immunoprecipited with Cox II antibody or negative control IgG. Samples were loaded on a SDS-PAGE followed by Western Bl

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Experimental details: Figure 6. Nbea localization in WT neurons. (A) Somatic Nbea concentrates near the ERGIC and Golgi complex. WT hippocampal neurons (E18) were cotransfected by a calcium phosphate precipitation method at DIV10-11 with plasmids encoding ERGIC53-GFP (ERGIC53) and mCherry (not depicted in the merge). At DIV14, cells were fixed and stained for endogenous Nbea with a rabbit polyclonal antibody (green) and for the markers indicated (ER marker KDEL, cis-Golgi marker GM130, and trans-Golgi marker TGN38 or Vti1A; dendritic marker MAP2 not depicted in the merge). All experiments were performed on mouse neurons, except for the analysis of TGN38, which was performed on rat neurons because of the lack of reactivity of the corresponding antibody in mouse cells. (B) Quantification of the colocalization of somatic Nbea with the different indicated markers using Pearson's correlation coefficient (PCC) and Manders' overlap coefficient (MOC). The numbers of cells analyzed are given in the histogram bars. (C) Dendritic Nbea localization. Cultured WT neurons were immunostained at DIV14 for Nbea, AnkyrinB, and MAP2. (D) Punctate localization pattern of Nbea in dendrites. Detail of a dendrite of a WT neuron costained for MAP2 (left) and Nbea (right). (E) Nbea-positive puncta show partial overlap with recycling endosomal and postsynaptic markers but low overlap with presynaptic and lysosomal markers. (top three images) DIV15 WT hippocampal neurons (cultured form E18 embryos) were transfected

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Experimental details: FIGURE 5: Centrosome degradation is specific. (A) Mitochondria are not degraded during HS. Maximum projections from confocal microscopy images show representative images of cntrl and HS cells immunostained with ATP5A (left; bar,10 mum) and mitochondrial Hsp70 (green) and gamma- tubulin (red); middle and right, inset, centrosomes (bar, 10 mum). (B) Kinetochores are not degraded during HS. Maximum projections from confocal microscopy images show representative images of prometaphase cells from cntrl and HS cells immunostained with CenpE (green) and CREST (red); bar 10 mum. (C) Semiquantitative analysis of integrated intensity of the midbody marker RacGap (x10 5 arbitrary units, mean +- SEM) demonstrates no significant difference in signal intensity in HS cells. (D) Semiquantitative analysis of integrated intensity of the midbody marker mitotic kinesin-like protein (x10 5 arbitrary units, mean +- SEM) demonstrates no significant difference in signal intensity in HS cells. (E) Maximum projections from confocal microscopy images show representative images of cntrl and HS cells immunostained with Sept7 (red, decorates midbody, MB, and centrosomes, Cen) and Centrin2 (green, as centrosome marker); bar, 5 mum. HS results in loss of Septin7 from centrosomes but not from midbodies in the same cell. (F) Disruption of Septin7 signal after HS is shown at the centrosome but not at the midbody by semiquantitative analysis of integrated intensity (x10 5 arbitrary units, mean +- SEM).

Supportive validation

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Experimental details: FIGURE 6: The centrosome is a substrate organelle for molecular chaperone Hsp70. (See also Supplemental Figures S1-S3.) (A) Left, images of maximum projections from cntrl and HS cells as indicated show that upon HS, Hsp70 accumulates at the centrosome and in the nucleus (inset, arrow points at the centrosome); bar, 10 mum. Semiquantitative analysis of integrated intensity (x10 5 arbitrary units) of centrosomal Hsp70 before and after HS (15-20 centrosomes/sample, mean +- SEM). (B) Superresolution images (OMX) demonstrate loss of gamma-tubulin (red) from HS cells and recruitment of Hsp70 (green) as an outer layer in stressed cells; bar, 0.2 mum. (C) Immunoprecipitation (IP) of Hsp70 pulls down PCNT. Immunoglobulin G (IgG), control. (D) Centrosome-targeted Hsp70 (cHsp70) protects gamma-tubulin from HS, whereas membrane-targeted Hsp70 (mHsp70) does not. Data are shown as semiquantitative profiles of confocal microscopy images. Right, percentage of cells with centrosomal gamma-tubulin after HS in stably expressing centrosome-(cHsp70) or membrane-(mHsp70) targeted Hsp70-expressing cells (four experiments, 500-600 cells/sample, mean +- SD, one-way analysis of variance [ANOVA] combined with Tukey's multiple comparison test). (E) cHsp70, but not the chaperone-negative mutant cHsp70D10S, protects gamma-tubulin signal at the centrosome; semiquantitative analysis of integrated gamma-tubulin signal intensity (x10 5 arbitrary units, mean +- SEM). (F) cHsp70 protects centrosomal Centri

Supportive validation

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Experimental details: Fig 7 Nanocurcumin prevents hypoxia induced mitochondrial translocation of p53 in HVCM cells: Translocation of p53 in mitochondria (mito) in HVCM cells was time-dependent and initiated within1 h of hypoxia. Nanocurcumin prevented p53 translocation to mitochondria in HVCM cells under hypoxia better than curcumin (A, B). Also, enhancement in levels of p53 (Red) and mtHsp70 (Green) was observed after hypoxia insult in HVCM cells after 24 h (C). Nanocurcumin treatment down-regulated p53 and mtHsp70 levels better than curcumin treated cells under hypoxia. Bar represents 10 mum.

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Experimental details: Fig 4 TRIM33 regulates A-MYB stability through ubiquitination. ( A ) HEK293T cells were transfected with HA-tagged ubiquitin and FLAG-tagged A-MYB in the presence or in the absence of GFP-tagged TRIM33. To detect ubiquitinated A-MYB, immunoprecipitation was performed on the lysates using anti-FLAG affinity beads and a Western blot was performed using anti-HA antibodies (top panel). To detect the immunoprecipitated A-MYB, the Western blot was probed with anti-FLAG antibodies (middle panel). Expression of tagged TRIM33 and the loading control HSP70 is shown in the bottom panel. ( B ) HEK293T cells were transfected with HA-tagged ubiquitin and FLAG-tagged A-MYB and either a control or TRIM33 shRNA expression vector. A-MYB was immunoprecipitated and Western blotting was performed as in ( A ) to detect ubiquitinated A-MYB (top panel). Lysates were subjected to Western blotting with anti-TRIM33 antibody to show knock down and anti-gamma-Tubulin antibody as a loading control (bottom panels). ( C ) The protein stability of A-MYB in the presence and in the absence of TRIM33 was monitored using the protein translation inhibitor cycloheximide (CHX). Cells were transfected as in ( A ) and CHX was added at 10 mug/ml and samples were analyzed by Western blots at various time points, as shown. HSP70 was used as the loading control. ( D ) FLAG-tagged A-MYB and GFP-tagged TRIM33 were co-expressed in HEK293T cells. Lysates were subjected to immunoprecipitation with anti-FLAG beads or, as a con

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Experimental details: Figure 2 Bax staining appears in mitochondria. HeLa cells treated with 1 muM staurosporine for 2 h were double immunostained with antibodies against amino acids 11-30 of human Bax (Bax N-20 sc-493; Santa Cruz Biotechnology ) and mt-hsp-70. Fluorescence microscopy was performed using a LSM 410 confocal microscope ( Zeiss ). The two channels are shown separately (A, anti-Bax; B, anti-mt-hsp-70) and merged (C).

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Experimental details: FIGURE 1: Loss of full-length APC induces perinuclear redistribution of mitochondria. (A) APC was silenced in U2OS cells by siRNA (APC #1 and #2), and mitochondrial distribution was analyzed by immunofluorescence microscopy after cells were stained for mitochondria (CMX-Ros) and APC. The microtubule network remained intact (alpha-tubulin). (B) The distribution of mitochondria in different ""zones"" was scored (C), revealing redistribution of mitochondria to the perinuclear region (zone 1) with APC siRNAs (***, p < 0.001). (D) Loss of APC in U2OS cells was confirmed by Western blot. (E) HDF1314 cells treated with EB1 siRNA were stained for mitochondrial distribution (CMX-Ros) and EB1. Cells displaying EB1 knockdown are indicated (*). (F) Scoring of mitochondrial distribution after EB1 silencing revealed no significant difference relative to control (n.s., not significant). Bar graph data are presented as mean (+-SD), statistical analysis by unpaired two-tailed t test with Bonferroni correction (C and F). Scale bars: 10 mum.

Supportive validation

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Experimental details: FIGURE 4 Inhibition of PP2A's dephosphorylation of pATR and ATR-L accumulation in the cytoplasm leads to reduced association of ATR with tBid on mitochondria. (A) PLA shows that cytoplasmic ATR directly associates with Bid and that this association increases with UV treatment, but the UV-induced association is attenuated by PP2A inhibitor treatment. The nuclei are stained with DAPI and mitochondria are indicated by mtHSP70 immunofluorescence. A549 cells were UV irradiated at 40 J/m 2 with a 2 h recovery. (B) A graphic display of the PLA data shown in (A) . The p < 0.05 refers to the sample (+UV, -PP2Ai) versus any of other samples. (C) ATR-H accumulation at the mitochondria increases with UV treatment at 40 J/m 2 in A549 cells, but is reduced in cells treated with PP2A inhibitor. (D) Biochemical confirmation of the reduction in the cytoplasmic ATR:tBid association observed by PLA (A,B) . A549 cells were pretreated with PP2Ai followed by UV irradiation with a 2 h recovery. After cellular fractionation ATR was immunoprecipitated from the cytoplasmic fraction using C-terminal-specific ATR antibody. The association of tBid with ATR was confirmed by WB.

Supportive validation

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Experimental details: Fig. 1 Mitochondria and EVs activate distinct pro-inflammatory cytokines. a , b Extracellular mitochondria induce the secretion of pro-inflammatory cytokines. Mitochondria (Mito)(isolated from MEFs) or EVs (isolated by differential centrifugation from the media of MEFs grown for 24 h in EV-depleted media) were added to RAW cells in their culture media. The release of IL6 ( a ) and IP10 ( b ) into culture media was measured by ELISA 24 h. Individual points represent independent experiments ( a , n = 3; b , n = 4). Bars show the average +- SD. One-way ANOVA. c Representative western blot showing the amount of the specified mitochondrial proteins in the indicated cell types (20 ug) vs their EVs (5 ug). TOM20, outer membrane protein; NDUFA9, Complex I subunit; mtHSP70 matrix protein associated with the IM; PDH, matrix protein. Actin is used as a control, as it has been shown to associate with EVs. d AA-treated MEFs mitochondria stimulate IP10 production. RAW cells were treated as above with EVs (from 10 x 10 6 cells) and mitochondria (12 ug) isolated from Control or AA-treated MEFs, and IP10 release in culture media measured by ELISA. Individual points represent independent experiments (mitochondria, n = 4; EVs, n = 6). Bars show the average +- SD. One-way ANOVA. e AA treatment of WT MEFs causes the selective degradation of mitochondrial proteins. MEFs were treated with AA for 24 h and the indicated mitochondrial proteins analysed by western blot. f Enrichment of the indicated mi

Supportive validation

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Experimental details: Fig. 6. HD-PTP and Rabaptin-5 interact via the ESCRT-III-binding site in HD-PTP and Rabaptin-5 CC2-2. (A) Schematic representation of key Rabaptin-5 and HD-PTP domains and interacting regions. The CHMP4/ESCRT-III-binding site in HD-PTP is highlighted by a dark circle. The minimal interacting region of Rabaptin-5 (RBPT5) identified by Y2H screen is underlined in bold. (B) Yeast cultures were co-transformed with full-length Rabaptin-5 and with the indicated HD-PTP constructs, and liquid cultures were streaked onto agar plates containing selection media as shown. DDO refers to double dropout medium, QDO refers to quadruple dropout medium. Representative data from three independent experiments. (C) Lysates from HEK293T cells co-transfected with GFP-Rabaptin-5 and HA-HD-PTP were immunoprecipitated (IP) with anti-HA and proteins detected by western blotting. Input is 2% of offered protein. Representative data from three independent experiments. (D) Lysates from HEK293T cells transfected with HA-HD-PTP were immunoprecipitated with anti-HA and proteins detected by western blotting. Input is 2% of offered protein. Representative data from three independent experiments. (E) Relocated HD-PTP recruits GFP-Rabaptin-5 to mitochondria. Top, schematic showing FKBP-HD-PTP-Myc relocating to mitochondria upon rapamycin-induced heterodimerisation of FKBP with the mitochondrially localised Mito-FRB. Bottom, immunofluorescence of HeLa cells expressing Mito-FRB, FKBP-HD-PTP-Myc and either GFP or GF

Supportive validation

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Experimental details: FIGURE 7: Hsp70 enables centrosome recovery, and protects centrosome functions after HS. (A) Semiquantitative analysis (x10 5 arbitrary units) of Centrin2 signal intensity shows centrosome disruption and recovery after HS during 24 h. (B) Semiquantitative intensity profiles of PCNT from cells recovered for 24 h at 37@C after HS demonstrate that Hsp70 depletion impairs centrosome recovery. (C) Confocal microscopy images demonstrating rescue of MT regrowth early after microtubule depolymerization (alpha-tubulin, 1 min of regrowth) after HS in cells expressing the centrosome targeting protein cHsp70 but not the membrane-targeting protein mHsp70. Percentage of the cells positive for detectable MT regrowth 1 min after HS exposure in RPE cell lines expressing cHsp70 or mHsp70 (five experiments, 400-500 cells/sample, mean +- SD). (D) Percentage of the cells with cilia after HS in cells expressing cHsp70 or mHsp70 (three experiments, 400-500 cells/sample, mean +- SD). Maximum projections of ciliated cells (cilia marker, glutamylated tubulin, red; centrosome marker, gamma-tubulin, green) after HS exposure in cells expressing cHsp70 or mHsp70. (E) Centrosomal Hsp70 protects centrosome from HS-induced damage in IS conjugates; left, x10 5 arbitrary units, 10-40 centrosomes/sample, mean +-S EM; middle, distance between centrosome and IS, micrometers. Right, gamma-tubulin, red, over DIC images; bar, 5 mum.

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Experimental details: Figure 1 RelA and IkappaBalpha reside in mitochondria Protein levels from the indicated sub-cellular fractions were analysed by immunoblotting. Mitochondrial and cytosolic extracts were prepared from MDA-MB-231 ( A ) and HEK293 ( A, B ) cells by differential centrifugation. Both fractions were treated with 10 ng/ug of protein with proteinase K for 30 min on ice. ( C ) The ER from MDA-MB-231 cells was separated from crude mitochondrial extracts on a 15%/17.5%/20% OptiPrep gradient. Pure ER was collected in the 20% fraction and treated with 10 ng/ug of protein with proteinase K for 30 min on ice. ( D ) Mitochondria from HEK293 cells were treated with 0.2 U DNAse per mg of mitochondria for 15 min at room temperature and sub-fractionated by swelling with 10 mM Tris, pH 7.4. The remaining mitoplast containing only the inner mitochondrial membrane and the enclosed matrix was additionally treated with 5 ng/ug of protein with proteinase K from 30 min on ice. ( E ) RelA and I kappa B alpha were knocked down with siRNA in MDA-MB-231 cells and proteinase K-treated mitochondria were prepared as in A. Data are representative of a minimum of two independent experiments.

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Experimental details: Figure 2 TOM40 and mortalin are required for the mitochondrial import of RelA Mitochondrial and cytosolic extracts were prepared by differential centrifugation from U2OS cells, where TOM40 ( A ), TIM50 ( B ) or mortalin ( C ) were knocked down with siRNA. The mitochondrial fractions were treated with 10 ng/ug of protein with proteinase K for 30 min on ice. Protein levels in each fraction were analysed by immunoblotting as indicated. Data are representative of a minimum of two independent experiments.

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Experimental details: Figure 1. MCU Complex Composition and Mitochondrial Ca 2+ Handling in Fibroblasts from MICU1 Loss-of-Function Patients (A) Representative immunoblots of Hsp70, MICU1, MICU2, MCU, and EMRE in control (CTRL; CTRL1 and CTRL2) and MICU1-patient fibroblasts. Relative protein levels are displayed in the bar graph; each protein was normalized to Hsp70, and expressed relative to the mean of CTRL1 and CTRL2 fibroblasts (n = 3, *p < 0.05, **p < 0.01). (B) Relative mRNA levels of total MICU1 (MICU1 TOT ), transcript variant 3 of MICU1 (MICU1 v3 ), MICU2, MCU, and EMRE. Each transcript was normalized to beta-actin mRNA, and expressed relative to the mean of CTRL1 and CTRL2 fibroblasts (n = 3, *p < 0.05). Double-logarithmic plot of the initial rates of Ca 2+ uptake against the peak free [Ca 2+ ] c . Slope of each linear fit is indicated. The following total CaCl 2 additions were applied: 3, 4, 5, 6, 10, and 30 muM (mean +- SEM, n = 4). For calculation of the initial rates linear fits were used because exponentials could not be fit well when the uptake was small. However, the exponential fit is expected to be different from the linear fit when the Ca 2+ clearance is substantial, so we recalculated the uptake rates at [Ca 2+ ] c of 15 muM, where the CTRLs gave 0.116 +- 0.0176 muM/s and the MICU1-patient showed 0.026 +- 0.0038 muM/s (p < 0.05, Mann-Whitney), confirming a decrease in the mitochondrial Ca 2+ uptake in the MICU1-patient at > 10 muM [Ca 2+ ] c . (D and E) Mean time courses from

Supportive validation

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Experimental details: Figure 2. Ablation of MICU1 in Mouse SM (A) Representative immunoblots of Hsp70, MICU1, MICU2, MCU, and EMRE in SM from CTRL Micu1 F/F (CTRL, black bars) and muscle-specific (CK promoter-drive Cre recombinase) MICU1 knockout (MICU1-smKO, red bars) mice. Relative protein levels are displayed in the bar graph; each proteinwas normalized to Hsp70, and expressed relative to CTRL (mean +- SEM, n = 3, *p < 0.01, **p < 0.001). Relative mRNA levels of total MICU1 (MICU1tot), transcript variant 3 of MICU1 (MICU1 v3 ), transcript variant 2 of MICU1 (MICU1 v2 ; also known as MICU1.1), transcript variant 1 of MICU1 (MICU1 v1 ), MICU2, MCU, and EMRE in SM from CTRL and MICU1-smKO mice. Each transcript was normalized to beta-actin mRNA and expressed relative to CTRL (mean +- SEM, n = 3, *p < 0.05, Student's t test). (C and D) [Ca 2+ ] m (mtRCaMP) versus [Ca 2+ ] c (fura2) curves from individual CTRL (C) and MICU1-smKO (D) isolated SM fibers. Fibers were pretreated with Tg in a Ca 2+ -free ECM. To evoke SOCE, 2 mM CaCl 2 (Ca 2+ ) was added (n = 15-16 fibers). (E) Mean traces of the [Ca 2+ ] m responses versus SOCE-associated [Ca (2) c for CTRL and MICU1-smKO from (D) and (E), respectively. [Ca 2+ ] c at which CTRL and MICU1-smKO fibers showed a 10% increase in [Ca 2+ ] m (expressed as F/F 0 of mtRCaMP). Experiments were as in (C) and (D).